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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23525208_23528606_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23525208 - 23528606
Intron Length:
3399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATCTTTAACA
Flanking Amino Acid:
ATREAFSSLQANMTSLGLKL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
80
0.94
1.1
79.94
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008122
23417386 - 23615595
198210
ENSAPLT00000022070
23417321 - 23615595
198275
ENSAPLT00000019261
23417321 - 23606959
189639