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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23528739_23529799_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23528739 - 23529799
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTCTA
5'SS Class:
major
3'SS Sequence:
TCATTTCACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ATCTTTGTAATC
Flanking Amino Acid:
KSLKHNSLDFTKTFESSGKS
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
69.7
0.44
0.9
65.7
34.9
Minor 5ss
34.5
-1.8
3.1
46.8
42.6
Minor BPS
50.6
-0
2
63.17
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022070
23417321 - 23615595
198275
ENSAPLT00000019261
23417321 - 23606959
189639
ENSAPLT00000008122
23417386 - 23615595
198210