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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23529951_23538749_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23529951 - 23538749
Intron Length:
8799

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTCTTGAGC
Flanking Amino Acid:
RFLKLHLENKVEYSDMFKVS
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.7
1.15
0.7
85.2
31.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.5
0.51
1
70.2
40.1
Minor 5ss
24.8
-2.9
3.6
33.7
41.6
Minor BPS
60
0.3
1.8
72.74
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008122
23417386 - 23615595
198210
ENSAPLT00000022070
23417321 - 23615595
198275
ENSAPLT00000019261
23417321 - 23606959
189639