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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23538838_23544925_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23538838 - 23544925
Intron Length:
6088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
TTTTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATACATTAATA
Flanking Amino Acid:
DCPLFKKKIVVDSAKVVVHS
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
66
39.7
Major BPS
80
0.75
1
78.6
31
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
34.5
-1.8
3.2
43.8
43.8
Minor BPS
66.2
0.51
1.6
75.02
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007825
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022070
23417321 - 23615595
198275
ENSAPLT00000019261
23417321 - 23606959
189639
ENSAPLT00000008122
23417386 - 23615595
198210