Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23659339_23662016_F

Intron Information:

Intron Rank:

130896

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

23659339 - 23662016

Intron Length:

2678

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTCTGTTAT

5'SS Class:

weak_major

3'SS Sequence:

TGTTACCATTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAG

U12 Branch Point Sequence:

CTTCTGTTACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.3

70.4

36.4

Major BPS

66.8

0.42

1.5

75.7

36.5

Major PPT

74.6

0.55

71.1

39.7

Minor 5ss

45.1

-0.5

2.6

58.4

40.5

Minor BPS

47.1

-0.2

2.3

63.68

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020304

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028369

23659176 - 23663070

3895