About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_23870702_23870955_R

Intron Information:

Intron Rank:
134253
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
23870702 - 23870955
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
GTATCTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGCTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
32.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.3
0.43
1.1
72.3
37.9
Minor 5ss
61.5
0.39
2.2
74.2
34.9
Minor BPS
47.3
-0.1
2.3
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019513
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026497
23870397 - 23927974
57578
ENSAPLT00000018168
23870397 - 23927974
57578