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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24133220_24136545_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
24133220 - 24136545
Intron Length:
3326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTAATC
5'SS Class:
major
3'SS Sequence:
CTGTTGAGGTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTCCCCAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
71.8
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
55.1
0.12
1.1
55
44.6
Minor 5ss
36.7
-1.5
3.3
51.9
44.9
Minor BPS
50.5
0.09
2
73.93
43.1

Associated Gene:

Gene:
C15orf41
Ensembl Gene ID:
ENSAPLG00000007516
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007815
24129249 - 24226480
97232