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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24136619_24156331_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24136619 - 24156331
Intron Length:
19713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTTGTCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
76.5
39.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76.5
0.6
0.9
71.3
39.5
Minor 5ss
42.2
-0.9
2.8
59.5
38.1
Minor BPS
52
0.14
2.4
82.56
39.6

Associated Gene:

Gene:
C15orf41
Ensembl Gene ID:
ENSAPLG00000007516
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007815
24129249 - 24226480
97232