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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24156412_24156772_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24156412 - 24156772
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATC
5'SS Class:
major
3'SS Sequence:
TATTTGTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTTCTCTTATTT
Flanking Amino Acid:
DGVLANQVYQCTVNDCCYGP
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
73.5
35.3
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
83.3
0.75
0.9
77.6
36.4
Minor 5ss
44.2
-0.6
2.8
61
43.5
Minor BPS
62.3
0.47
1.6
77.8
38.7

Associated Gene:

Gene:
C15orf41
Ensembl Gene ID:
ENSAPLG00000007516
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007815
24129249 - 24226480
97232