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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24156823_24159892_F

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
24156823 - 24159892
Intron Length:
3070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTGAAGCTATCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CATTTCTTAACC
Flanking Amino Acid:
CYGPLVDCIKHAIGHEHEVL
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56.4
43.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
59.5
0.21
1.1
55.4
44.2
Minor 5ss
97.5
1.6
0.6
95.7
13.5
Minor BPS
79
0.89
1.1
79.05
36.2

Associated Gene:

Gene:
C15orf41
Ensembl Gene ID:
ENSAPLG00000007516
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007815
24129249 - 24226480
97232