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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24159961_24164997_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24159961 - 24164997
Intron Length:
5037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTTTATAAACA
Flanking Amino Acid:
MLLEKNLSFIAEDQLRAKGY
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
74.5
0.55
0.9
69.7
34.7
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
57.1
0.22
1.9
72.91
38.8

Associated Gene:

Gene:
C15orf41
Ensembl Gene ID:
ENSAPLG00000007516
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007815
24129249 - 24226480
97232