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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24163583_24165008_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24163583 - 24165008
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCTGGCTA
5'SS Class:
weak_major
3'SS Sequence:
AGCCGAAGATCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTCTCTATATAT
Flanking Amino Acid:
LKVANNQLRAKGYDKTP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
56
42.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
48.3
-0
1.1
41.3
41.5
Minor 5ss
37.5
-1.4
3.3
47.6
42.4
Minor BPS
49.7
0.06
2
73.89
42.9

Associated Gene:

Gene:
C15orf41
Ensembl Gene ID:
ENSAPLG00000007516
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040111
24163562 - 24225472
61911