Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24272673_24272741_R

Intron Information:

Intron Rank:

140631

Intron Class:

major

Intron Phase:

Intron Coordinates:

24272673 - 24272741

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATGTTTTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.4

1.05

0.8

85.1

32.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.9

0.7

85.2

29.1

Minor 5ss

32.3

-2

4.4

49.2

Minor BPS

70.5

0.62

1.1

71.62

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023012

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021657

24271498 - 24272797

1300