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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24280789_24335714_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24280789 - 24335714
Intron Length:
54926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTCTTTGTATTC
Flanking Amino Acid:
TGLTILQVNNWFINARRRIV
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.6
0.76
0.9
81
36.2
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
46.1
-0.3
2.1
60.49
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007324
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007631
24279204 - 24441259
162056