About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2442231_2444297_F

Intron Information:

Intron Rank:
134794
Intron Class:
major
Intron Phase:
Intron Coordinates:
2442231 - 2444297
Intron Length:
2067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
ATTTAACTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTATATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
79.5
0.66
0.9
75.2
39
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
70
0.71
1.5
81.67
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022494
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030446
2441696 - 2444331
2636