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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2443038_2444297_F

Intron Information:

Intron Rank:
134797
Intron Class:
major
Intron Phase:
Intron Coordinates:
2443038 - 2444297
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTAACTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CTATATTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73
38.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
79.5
0.66
0.9
75.2
39
Minor 5ss
28.6
-2.5
3.5
36.8
47.7
Minor BPS
70
0.71
1.5
81.67
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022494
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043504
2442476 - 2444563
2088