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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24439126_24439993_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24439126 - 24439993
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TTACCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCTTGTTACCT
Flanking Amino Acid:
LRFHLLELEKVHELCDNFCH
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.7
0.69
0.8
77.9
30.6
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
53.4
0.19
2.3
78.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007324
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007631
24279204 - 24441259
162056