Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24440045_24440747_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

24440045 - 24440747

Intron Length:

703

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGCCT

5'SS Class:

strong_major

3'SS Sequence:

AACTTTCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

TTTCTCCCAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

68.8

41.8

Major BPS

0.45

0.9

67.6

25.3

Major PPT

79.9

0.67

0.9

73.7

35.9

Minor 5ss

33.5

-1.9

3.4

45.9

43.3

Minor BPS

57.6

0.32

1.9

82.59

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007631

24279204 - 24441259

162056