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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2444400_2445584_F

Intron Information:

Intron Rank:
134796
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2444400 - 2445584
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-CT
5'SS Sequence:
AAG|GTACCACCA
5'SS Class:
major
3'SS Sequence:
TTGTGCTTTCTCT|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACAGTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.2
56.4
42.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
25.6
-1.4
4.2
54.6
45.7
Minor 5ss
36.7
-1.5
3.2
49.5
46.2
Minor BPS
52.7
0.16
1.7
66.33
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022494
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039600
2441696 - 2446033
4338