About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2450485_2486555_F

Intron Information:

Intron Rank:
139988
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2450485 - 2486555
Intron Length:
36071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCCTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTCTCTCTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.9
36.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
81.8
0.72
0.9
84
24.6
Minor 5ss
72.3
0.75
1.7
78.8
35.5
Minor BPS
56
0.27
2.1
80.09
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025255
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018971
2450360 - 2487626
37267