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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24601020_24607394_F

Intron Information:

Intron Rank:
125896
Intron Class:
major
Intron Phase:
Intron Coordinates:
24601020 - 24607394
Intron Length:
6375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTGAT
U12 Branch Point Sequence:
TTGCTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
57.3
0.18
1.3
48.8
46.3
Major PPT
83.8
0.76
0.8
79.4
32.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
54.8
0.14
1.7
67.7
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017820
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039845
24600974 - 24618519
17546
ENSAPLT00000023664
24600974 - 24618519
17546