Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24616828_24618454_F

Intron Information:

Intron Rank:

125898

Intron Class:

major

Intron Phase:

Intron Coordinates:

24616828 - 24618454

Intron Length:

1627

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAC

U12 Branch Point Sequence:

ATAGCATGAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

85.3

31.1

Major BPS

0.5

0.9

61.4

35.9

Major PPT

83.7

0.76

0.7

76.5

32.2

Minor 5ss

47.9

-0.2

2.5

65.4

40.1

Minor BPS

0.08

1.8

69.67

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017820

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023664

24600974 - 24618519

17546