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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24851655_24856969_R

Intron Information:

Intron Rank:
135026
Intron Class:
major
Intron Phase:
Intron Coordinates:
24851655 - 24856969
Intron Length:
5315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTCTATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.5
0.89
0.7
84.7
29.6
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
55.5
0.03
1.7
61.39
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020006
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032003
24851392 - 24857765
6374