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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2486611_2506117_F

Intron Information:

Intron Rank:
139986
Intron Class:
major
Intron Phase:
Intron Coordinates:
2486611 - 2506117
Intron Length:
19507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTGTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATACTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.8
0.65
1
72.4
42.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
60.9
0.2
1.7
64.53
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025255
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046635
2486060 - 2519901
33842
ENSAPLT00000036121
2484979 - 2519901
34923
ENSAPLT00000017745
2484979 - 2508914
23936