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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24907425_24941396_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24907425 - 24941396
Intron Length:
33972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
GCATCTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTAAAATTAATT
Flanking Amino Acid:
MSEETAASNNDNSYARVRAV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
60.5
39.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.2
0.57
0.9
65.6
40.8
Minor 5ss
46.4
-0.4
2.7
56.9
41.5
Minor BPS
50.3
0.09
1.8
69.3
40.8

Associated Gene:

Gene:
SPRED1
Ensembl Gene ID:
ENSAPLG00000024729
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019227
24907393 - 24963227
55835