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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24949266_24950549_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24949266 - 24950549
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTTTTTAACC
Flanking Amino Acid:
IRRAVEDISQGYPPSQNDVE
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.9
90.9
28.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.9
0.7
0.8
76.7
31.2
Minor 5ss
37.4
-1.4
3.9
59.2
45.4
Minor BPS
81.3
0.96
1
84.09
27.8

Associated Gene:

Gene:
SPRED1
Ensembl Gene ID:
ENSAPLG00000024729
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019227
24907393 - 24963227
55835