About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24950600_24957912_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24950600 - 24957912
Intron Length:
7313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTATTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGTTTATTC
Flanking Amino Acid:
DVEVAEDCFQSTQENTSGSL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.3
0.7
0.8
74.7
40
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
51
0.01
2
65.17
41.7

Associated Gene:

Gene:
SPRED1
Ensembl Gene ID:
ENSAPLG00000024729
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019227
24907393 - 24963227
55835