Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24958072_24962567_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24958072 - 24962567

Intron Length:

4496

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

TTTGCCGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

CTATAGTAAACT

Flanking Amino Acid:

RACFPSQPNQVPPKSIRHVS

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

74.4

Major BPS

77.9

0.69

0.8

75.9

Major PPT

80.6

0.69

0.9

77.2

Minor 5ss

32.2

-2

40.3

45.3

Minor BPS

46.2

-0.2

2.4

69.44

Associated Gene:

Gene:

SPRED1

Ensembl Gene ID:

ENSAPLG00000024729

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019227

24907393 - 24963227

55835