About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_24998695_24999081_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24998695 - 24999081
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TGTAACACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTGTAACA
Flanking Amino Acid:
LTKPLNSDQVERLEKINDAL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.3
0.41
1
59.9
41.1
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
57.8
0.24
2
75.15
36.6

Associated Gene:

Gene:
FAM98B
Ensembl Gene ID:
ENSAPLG00000006881
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007146
24989226 - 25003599
14374