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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25001655_25002902_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25001655 - 25002902
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTTTACCA
Flanking Amino Acid:
REKTVCAINKVLMGRVPDRG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.1
0.68
0.9
74
35.5
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
62.8
0.4
1.6
75.15
36.6

Associated Gene:

Gene:
FAM98B
Ensembl Gene ID:
ENSAPLG00000006881
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007146
24989226 - 25003599
14374