About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25011835_25012328_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25011835 - 25012328
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
GCATGTTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
CTTGACTCAATT
Flanking Amino Acid:
CTLGVKEQLHGQEEGPFTFP
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
68.2
0.41
0.9
61.3
40
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
53
0.17
1.9
72.92
44.2

Associated Gene:

Gene:
RASGRP1
Ensembl Gene ID:
ENSAPLG00000006429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029576
25009781 - 25049845
40065
ENSAPLT00000006703
25010156 - 25049313
39158