Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25015023_25015548_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25015023 - 25015548

Intron Length:

526

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTACG

5'SS Class:

strong_major

3'SS Sequence:

ATATTTTACACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

ATGTTATAAACT

Flanking Amino Acid:

ISKHVQRMVDSVFKNYDHDQ

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

77.4

37.4

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

74.3

0.55

69.6

Minor 5ss

38.5

-1.3

2.7

48.6

40.2

Minor BPS

54.4

0.22

1.9

74.93

41.9

Associated Gene:

Gene:

RASGRP1

Ensembl Gene ID:

ENSAPLG00000006429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029576

25009781 - 25049845

40065

ENSAPLT00000006703

25010156 - 25049313

39158