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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25027127_25029041_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
25027127 - 25029041
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CACCATACAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACC
Flanking Amino Acid:
MLCVKICYFVRYWITEFWVM
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
54
0.09
0.9
47.9
33.4
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
63.2
0.4
1.7
74.15
36.9

Associated Gene:

Gene:
RASGRP1
Ensembl Gene ID:
ENSAPLG00000006429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029576
25009781 - 25049845
40065
ENSAPLT00000006703
25010156 - 25049313
39158