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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25030693_25047650_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25030693 - 25047650
Intron Length:
16958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
DLLETCIQSFDLEGNAYQNN
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88
0.85
0.8
85.7
33.4
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
RASGRP1
Ensembl Gene ID:
ENSAPLG00000006429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029576
25009781 - 25049845
40065
ENSAPLT00000006703
25010156 - 25049313
39158