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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25047821_25049813_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25047821 - 25049813
Intron Length:
1993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTGTACTTACTT
Flanking Amino Acid:
MGTLGKRRENRQPAQGCSTV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
62.7
43.4
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
80.7
0.69
0.8
73.5
37.1
Minor 5ss
29.6
-2.3
2.7
34.6
40.9
Minor BPS
62.5
0.47
1.8
80.62
41.6

Associated Gene:

Gene:
RASGRP1
Ensembl Gene ID:
ENSAPLG00000006429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029576
25009781 - 25049845
40065