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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2506190_2519727_F

Intron Information:

Intron Rank:
139994
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2506190 - 2519727
Intron Length:
13538

Sequence Information:

Terminal Dinucleotides:
GT-AT
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCCTTAT|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGGTCTCTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
41.8
-0.4
3.1
65.4
30.5
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
56.7
0.19
1.7
67.09
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025255
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046325
2494014 - 2519901
25888
ENSAPLT00000036121
2484979 - 2519901
34923
ENSAPLT00000046635
2486060 - 2519901
33842