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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25089391_25092816_F

Intron Information:

Intron Rank:
1
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
25089391 - 25092816
Intron Length:
3426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
AACAATTTCAGAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTCTTCTGAACA
Flanking Amino Acid:
SLVPGYGYIPSKLDQGENCL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
47.3
-0.1
1.7
49.5
42.7
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
72.9
0.72
1.4
79.77
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006312
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006558
25089347 - 25098589
9243
ENSAPLT00000026375
25086676 - 25098271
11596