Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25093066_25093529_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25093066 - 25093529

Intron Length:

464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTCATTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATAAT

U12 Branch Point Sequence:

TCTGCATTAAGA

Flanking Amino Acid:

FFKFLRNVSLRSNENRMDSS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.76

1.2

80.7

33.6

Major BPS

72.6

0.56

1.2

72.3

40.4

Major PPT

68.4

0.41

1.1

72.9

36.8

Minor 5ss

32.7

-2

3.2

43.9

43.8

Minor BPS

53.9

0.12

68.02

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006312

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006558

25089347 - 25098589

9243

ENSAPLT00000026375

25086676 - 25098271

11596