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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25097125_25097449_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25097125 - 25097449
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATGTTACTT
Flanking Amino Acid:
SKRLANKKLYRAESGKTGCF
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.3
0.73
0.8
80.3
31.7
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
48.9
-0
2.3
75.63
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006312
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006558
25089347 - 25098589
9243