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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25115930_25118944_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25115930 - 25118944
Intron Length:
3015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTG
5'SS Class:
strong_major
3'SS Sequence:
CATGCCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGCTTTCTAACA
Flanking Amino Acid:
PPNPCPIGKTVNDGCLENTP
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.6
41.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.3
0.5
0.9
65.8
35.5
Minor 5ss
37.9
-1.4
3
50.1
46.1
Minor BPS
57.9
0.24
1.7
68.01
38.6

Associated Gene:

Gene:
SCG5
Ensembl Gene ID:
ENSAPLG00000017881
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027018
25114810 - 25127157
12348
ENSAPLT00000020150
25111422 - 25127157
15736
ENSAPLT00000046093
25111951 - 25127157
15207
ENSAPLT00000037536
25111951 - 25127157
15207