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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25119058_25123199_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25119058 - 25123199
Intron Length:
4142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
ATGAGTTTGATG
Flanking Amino Acid:
EHDYPNVGKWSKNLLFEKMN
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
45.7
-0.4
1.8
48.43
39.9

Associated Gene:

Gene:
SCG5
Ensembl Gene ID:
ENSAPLG00000017881
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027018
25114810 - 25127157
12348
ENSAPLT00000020150
25111422 - 25127157
15736
ENSAPLT00000046093
25111951 - 25127157
15207