About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25119058_25127061_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25119058 - 25127061
Intron Length:
8004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTAATAAAT
Flanking Amino Acid:
EHDYPNVGKWSVNPYLQGQR
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.1
37.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.9
0.9
0.7
88.2
28.6
Minor 5ss
33.7
-1.9
2.8
31.8
42.6
Minor BPS
49.6
0.05
1.9
77.14
38.3

Associated Gene:

Gene:
SCG5
Ensembl Gene ID:
ENSAPLG00000017881
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037536
25111951 - 25127157
15207