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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25175136_25176301_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25175136 - 25176301
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
TKKINPTASLKERLRQKEAN
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.1
33.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
45.8
-0.4
2.9
61.2
44.7
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
FMN1
Ensembl Gene ID:
ENSAPLG00000031029
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022336
25175091 - 25314687
139597