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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25176387_25187344_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25176387 - 25187344
Intron Length:
10958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TATCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TTGAACTTAAAG
Flanking Amino Acid:
KRESKSISKERIKVAQQSVS
Intron Amino Acid Position:
1146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
74.3
37.2
Major BPS
69
0.47
1
69.9
32.6
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
41.8
-0.9
3.4
59.7
45.1
Minor BPS
56.3
0.06
1.8
62.83
44.3

Associated Gene:

Gene:
FMN1
Ensembl Gene ID:
ENSAPLG00000031029
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022336
25175091 - 25314687
139597