Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25187495_25190874_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25187495 - 25190874

Intron Length:

3380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CCCCCCATCATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAC

U12 Branch Point Sequence:

TTTCCCCCCATC

Flanking Amino Acid:

EESSLENAQKYFEETVGYFG

Intron Amino Acid Position:

1096

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

83.4

Major BPS

71.3

0.53

1.1

63.1

44.5

Major PPT

63.4

0.3

0.8

56.8

25.4

Minor 5ss

-0.2

2.8

68.9

36.6

Minor BPS

45.6

-0.3

2.2

65.04

40.5

Associated Gene:

Gene:

FMN1

Ensembl Gene ID:

ENSAPLG00000031029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022336

25175091 - 25314687

139597