About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25190927_25214418_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25190927 - 25214418
Intron Length:
23492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGTTTTTCATT
Flanking Amino Acid:
KEKLEEFFQKAKEECKKEES
Intron Amino Acid Position:
1079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
1
77.6
35.6
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
55.8
0.26
1.7
72.92
39.2

Associated Gene:

Gene:
FMN1
Ensembl Gene ID:
ENSAPLG00000031029
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022336
25175091 - 25314687
139597