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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25214512_25228519_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25214512 - 25228519
Intron Length:
14008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGGG
5'SS Class:
major
3'SS Sequence:
ATTCTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTCTTTCTAACA
Flanking Amino Acid:
DLRKLKRDLEASEKQMKLVC
Intron Amino Acid Position:
1048

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.1
67.1
44.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.1
0.79
0.7
80.6
30.8
Minor 5ss
37.6
-1.4
3.2
49.7
46.6
Minor BPS
63.8
0.43
1.6
75.11
36.7

Associated Gene:

Gene:
FMN1
Ensembl Gene ID:
ENSAPLG00000031029
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022336
25175091 - 25314687
139597