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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25235772_25240427_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25235772 - 25240427
Intron Length:
4656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGTT
5'SS Class:
major
3'SS Sequence:
TTCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
ATTCATTTAGTA
Flanking Amino Acid:
EELKLLDKPEQFLYELSQIP
Intron Amino Acid Position:
895

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73
36.4
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
38.6
-1.3
3.6
62
43.4
Minor BPS
50.1
0
1.7
64.28
36

Associated Gene:

Gene:
FMN1
Ensembl Gene ID:
ENSAPLG00000031029
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022336
25175091 - 25314687
139597