Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25251960_25263879_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25251960 - 25263879

Intron Length:

11920

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTATT

5'SS Class:

strong_major

3'SS Sequence:

ATTATCTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

CATTATTGAATT

Flanking Amino Acid:

TYEKKNKAKKIIKLLDGKRS

Intron Amino Acid Position:

816

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

85.4

30.8

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

78.7

0.65

0.8

70.6

40.4

Minor 5ss

47.8

-0.2

2.5

68.9

41.7

Minor BPS

54.9

0.23

1.6

70.86

40.3

Associated Gene:

Gene:

FMN1

Ensembl Gene ID:

ENSAPLG00000031029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022336

25175091 - 25314687

139597