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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_25267071_25290689_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25267071 - 25290689
Intron Length:
23619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTTC
5'SS Class:
weak_major
3'SS Sequence:
TGTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
AATATGTACACT
Flanking Amino Acid:
EHKEEIETLKSQFELRVFHI
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.2
37.8
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
83.1
0.74
0.9
77.3
37
Minor 5ss
63.5
0.46
2.4
76
40.1
Minor BPS
39.3
-0.7
2.5
59.42
44

Associated Gene:

Gene:
FMN1
Ensembl Gene ID:
ENSAPLG00000031029
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022336
25175091 - 25314687
139597